survival: Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Version: 3.1-12
Priority: recommended
Depends: R (≥ 3.4.0)
Imports: graphics, Matrix, methods, splines, stats, utils
Published: 2020-04-10
Author: Terry M Therneau [aut, cre], Thomas Lumley [ctb, trl] (original S->R port and R maintainer until 2009), Atkinson Elizabeth [ctb], Crowson Cynthia [ctb]
Maintainer: Terry M Therneau <therneau.terry at mayo.edu>
License: LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2)]
Copyright: see file COPYRIGHTS
URL: https://github.com/therneau/survival
NeedsCompilation: yes
Citation: survival citation info
Materials: NEWS
In views: ClinicalTrials, Econometrics, SocialSciences, Survival
CRAN checks: survival results

Downloads:

Reference manual: survival.pdf
Vignettes: Adjusted Survival Curves
Approximating a Cox Model
Multi-state models and competing risks
Concordance
Multi-state survival curves
Other vignettes
Population contrasts
Splines, plots, and interactions
The survival package
Roundoff error and tied times
Using Time Dependent Covariates
Validation
Package source: survival_3.1-12.tar.gz
Windows binaries: r-devel: survival_3.1-12.zip, r-release: survival_3.1-12.zip, r-oldrel: survival_3.1-12.zip
macOS binaries: r-release: survival_3.1-12.tgz, r-oldrel: survival_3.1-12.tgz
Old sources: survival archive

Reverse dependencies:

Reverse depends: aCGH, AdjBQR, AER, AF, ahaz, AIM, anoint, APtools, BART, bayesDP, BayesMixSurv, bayesSurv, bhm, biostat3, BivarP, BMA, bpcp, bshazard, carcass, cchs, CGEN, cmprsk, CNVtools, coin, ComparisonSurv, compound.Cox, cond, Copula.Markov.survival, CoxBoost, coxed, coxinterval, coxme, CoxPhLb, coxphSGD, coxphw, CoxR2, CoxRidge, coxrobust, CPE, crossmatch, crrp, crrSC, csampling, ctqr, cuRe, currentSurvival, discfrail, distcomp, dynamichazard, dynfrail, dynpred, eha, epiDisplay, epiR, factorial2x2, FamEvent, fitdistrplus, flexrsurv, flexsurv, flexsurvcure, frailtyEM, frailtyHL, frailtypack, frailtySurv, gamlss.cens, gamlss.nl, gcerisk, geecure, geneSignatureFinder, glmaag, glmpath, globalboosttest, globaltest, glrt, GORCure, greyzoneSurv, GRridge, GSAgm, GSED, gte, HCmodelSets, Hmisc, HybridMTest, iBST, ICBayes, icenReg, Icens, icensBKL, ICGOR, idmTPreg, IDPSurvival, imputeYn, InferenceSMR, intcure, interval, invGauss, IPCWK, ipcwswitch, ipflasso, isoSurv, iterativeBMAsurv, jlctree, JM, JMbayes, joineR, joineRmeta, joineRML, joint.Cox, JointModel, JSM, kaps, kin.cohort, km.ci, kmconfband, lava.tobit, lcmm, LCox, linERR, LMGene, LncMod, logicFS, LogicReg, LogrankPower, LongCART, MapGAM, marg, MergeMaid, messina, mexhaz, mfp, mhurdle, missDeaths, mixor, mma, mmc, MMMS, MPLikelihoodWB, MRH, mRMRe, MRsurv, MST, mstate, multcomp, multipleNCC, NADA, NestedCohort, nlreg, nltm, NPHMC, NPMLENCC, nricens, NSM3, optmatch, OrdFacReg, ordinalgmifs, OTRselect, OutlierDC, p3state.msm, packHV, paf, pamr, parfm, partDSA, pch, penalized, PenCoxFrail, penPHcure, peperr, permGPU, permGS, PHeval, PHInfiniteEstimates, plac, plRasch, PRIMsrc, prognosticROC, qrcm, QualInt, randomizeR, rbsurv, RcmdrPlugin.coin, RcmdrPlugin.survival, RegParallel, relsurv, RISCA, risksetROC, rms, RobustAFT, RPCLR, rprev, rstpm2, season, seawaveQ, selectiveInference, SemiCompRisks, seqDesign, seqMeta, SigCheck, simMSM, simulatorZ, smcure, smoothHR, smoothSurv, SNPassoc, snpStats, sp23design, speff2trial, SPREDA, spsurv, sptm, ssym, STAND, STAR, stepp, SubgrpID, superpc, surrosurvROC, survAUC, SurvBoost, survBootOutliers, survC1, survcomp, survexp.fr, survey, Survgini, survIDINRI, survivalMPL, survivalsvm, survJamda, survMisc, SurvRegCensCov, survRM2, survSNP, SurvTrunc, survtype, tdROC, TH.data, threg, thregI, time2event, timereg, tnet, TransModel, uniah, winRatioAnalysis, WPC, WR, YPPE
Reverse imports: ActFrag, addhazard, aftgee, AICcmodavg, AIM, allestimates, amt, ANF, Ball, bamlss, BayesCTDesign, BayesSurvival, baytrends, beanz, BeSS, BGPhazard, binequality, BioPETsurv, biospear, BivRec, blockForest, BloodCancerMultiOmics2017, BNPdensity, BSGW, bujar, c060, canceR, cancerGI, CancerSubtypes, carSurv, Cascade, casebase, casper, CatPredi, ccostr, CenBAR, cenROC, censCov, CeRNASeek, CFC, cg, chest, chngpt, chopsticks, CIEE, ciTools, clespr, clustcurv, cmprskQR, cohorttools, compareGroups, concreg, concurve, condSURV, controlTest, CopulaCenR, CoRpower, Counterfactual, coxphf, coxphMIC, coxrt, CP, CPsurv, CRUF, CsChange, cutoff, CutpointsOEHR, Cyclops, DDPGPSurv, DelayedEffect.Design, DeSousa2013, drgee, DStree, DTR, DWreg, DynNom, dynsurv, EGRET, EL2Surv, ELYP, EMA, ems, eNetXplorer, EnMCB, ePCR, Epi, epitab, epoc, equSA, etm, ezcox, factorMerger, fastcmprsk, fastStat, FHtest, fic, finalfit, fragilityindex, funest, gamlss, gbm, GDCRNATools, genefilter, GenEst, gestate, gfoRmula, ggparty, ggquickeda, ggRandomForests, ggrisk, GJRM, glmBfp, GPSCDF, gravity, greport, gtsummary, GWASTools, gwasurvivr, hdnom, hds, hesim, hoa, hrcomprisk, hrIPW, ICcalib, ICcforest, icemelt, idem, ilc, IMAS, imsig, ipred, ipw, ipwCoxCSV, IrregLong, iterativeBMAsurv, ivtools, ivygapSE, jomo, jskm, jsmodule, jstable, KMgene, kmi, KONPsurv, landest, landpred, lava, lillies, lodGWAS, longitudinalcascade, longROC, LTRCtrees, mable, MachineShop, maftools, MAGNAMWAR, maxadjAUC, mboost, mccmeiv, Mediana, merlin, MetabolicSurv, metaRMST, mets, miCoPTCM, MIICD, MiRKAT, miRspongeR, miWQS, mixPHM, mixtools, mlr, mlr3proba, mlt, model4you, modeLLtest, mombf, momentuHMM, moonBook, mpr, msaenet, msm, msmtools, MSstats, MTLR, mudens, muhaz, multiClust, multtest, MXM, My.stepwise, NNMIS, nnt, nparsurv, NPHazardRate, nsROC, numKM, obliqueRSF, ODS, OptimalTiming, orthoDr, pact, palasso, PAmeasures, pammtools, party, partykit, pathwayPCA, Patterns, pbatR, PDN, pec, personalized, Phase123, phenoTest, Plasmode, plsmselect, plsRcox, popEpi, POST, powerSurvEpi, pre, prioritylasso, prodlim, pseval, psfmi, psichomics, PTE, pubh, Publish, PWEALL, qgcomp, QTOCen, quickReg, R2Addhaz, rankhazard, RcmdrPlugin.KMggplot2, RecurRisk, regmedint, regplot, ReIns, remss, reReg, riskRegression, RItools, rld, ROlogit, rolr, rpsftm, rpst, rstanarm, Rsurrogate, RTCGA, RTCGAToolbox, RTNsurvival, RVFam, SCCS, scRNAtools, SEERaBomb, sensitivityPStrat, sglg, shrink, SIDES, sievePH, SIGN, sigsquared, simexaft, SimHaz, simPH, SIS, skpr, smcfcs, SMPracticals, spatsurv, spBayesSurv, spef, SSRMST, StatCharrms, stdReg, stpm, stratamatch, StratifiedMedicine, SubgrPlots, subtee, SUMMER, Sunclarco, Surrogate, SurrogateOutcome, SurrogateTest, surrosurv, surv2sampleComp, survAWKMT2, SurvCorr, survCurve, SurvDisc, survELtest, survidm, survivalAnalysis, survminer, survParamSim, survRM2adapt, survSens, survutils, survxai, SvyNom, tab, TBSSurvival, TCGAbiolinks, tfCox, TimeVTree, TNBC.CMS, tram, TraMineRextras, tranSurv, TreatmentSelection, trio, TSDT, tsriadditive, TwoPhaseInd, TwoStepCLogit, valorate, VarReg, vpc, WCE, weibulltools, WGCNA, WLreg, WRTDStidal, xlink, xpose4
Reverse suggests: agridat, aplore3, arsenal, ARTool, atable, BB, BFpack, bnnSurvival, boot, boot, Boruta, broom, butcher, BuyseTest, car, catspec, choplump, clinfun, confSAM, coreSim, curatedBladderData, curatedCRCData, curatedOvarianData, DAAG, dawai, desctable, discSurv, diversityForest, dlnm, dnet, doBy, dressCheck, DySeq, epade, EstimationTools, exactRankTests, extremefit, FastKM, flexmix, fluoSurv, forestmodel, FRESA.CAD, gamair, gamboostLSS, gamlss.inf, gap, genefu, genSurv, GGally, ggeffects, ggformula, ggfortify, ggstatsplot, glmnet, glmSparseNet, glmulti, Greg, grImport, grpreg, h2o, hal9001, HarmonizedTCGAData, heemod, highcharter, homomorpheR, HSAUR, HSAUR2, HSAUR3, HydeNet, icrf, insight, ISwR, JointAI, kernhaz, kyotil, lavaSearch2, lmtest, LogrankA, loose.rock, lss2, MARSS, MASS, MASS, maxstat, mc2d, MCPModGeneral, mediation, metaboGSE, metafor, mgcv, mgcv, mi, mice, missRanger, mistat, mitml, mlr3viz, mlt.docreg, MultiAssayExperiment, MuMIn, ncvreg, netdiffuseR, npsm, opera, optband, outreg, pander, parameters, parmsurvfit, parsnip, pder, pensim, performance, ph2bye, ph2mult, PINSPlus, pmml, PResiduals, purge, quantreg, qwraps2, R2HTML, randomForestSRC, ranger, rattle, reporttools, RLT, rpart, rpart, rsimsum, RVAideMemoire, safe, sandwich, simex, simstudy, simsurv, sirus, smog, smoothROCtime, SparkR, srvyr, SSLR, subscreen, support.BWS, support.BWS2, support.BWS3, support.CEs, survtmle, tableone, tbm, texmex, tidytidbits, timeROC, tramME, tramnet, trtf, truncreg, tuneRanger, Umpire, utile.tables, utile.tools, utile.visuals, visreg, wally, xtable, ztable
Reverse enhances: denstrip, emmeans, glmglrt, papeR, prediction, qvcalc, stargazer, texreg

Linking:

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