reproducible: A Set of Tools that Enhance Reproducibility Beyond Package Management

Collection of high-level, robust, machine- and OS-independent tools for making deeply reproducible and reusable content in R. The three workhorse functions are Cache, prepInputs, and Require; these allow for nested caching, robust to environments, and objects with environments (like functions), and data retrieval and processing, and package handling in continuous workflow environments. In all cases, efforts are made to make the first and subsequent calls of functions have the same result, but vastly faster at subsequent times by way of checksums and digesting. Several features are still under active development, including cloud storage of cached objects, allowing for sharing between users.

Version: 1.0.0
Depends: R (≥ 3.5)
Imports: backports, crayon, data.table (≥ 1.10.4), DBI, digest, fastdigest, fpCompare, gdalUtils, glue, googledrive, httr, magrittr, memoise, methods, qs, quickPlot, R.utils, raster, RSQLite, remotes, rgdal, rlang, sf, sp, testthat, tools, utils, versions
Suggests: archivist (≥ 2.1.2), covr, dplyr, fasterize, future, git2r (≥ 0.18), knitr, parallel, RCurl (≥ 1.95-4.8), rgeos, rmarkdown, TimeWarp
Published: 2020-02-20
Author: Eliot J B McIntire ORCID iD [aut, cre], Alex M Chubaty ORCID iD [aut], Tati Micheletti ORCID iD [ctb], Ceres Barros ORCID iD [ctb], Ian Eddy ORCID iD [ctb], Her Majesty the Queen in Right of Canada, as represented by the Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire at canada.ca>
BugReports: https://github.com/PredictiveEcology/reproducible/issues
License: GPL-3
URL: https://reproducible.predictiveecology.org, https://github.com/PredictiveEcology/reproducible
NeedsCompilation: no
SystemRequirements: 'unrar' (Linux/macOS) or '7-Zip' (Windows) to work with '.rar' files.
Language: en-CA
Materials: README NEWS
CRAN checks: reproducible results

Downloads:

Reference manual: reproducible.pdf
Vignettes: Cache using postgresql
Introduction to Cache
Package source: reproducible_1.0.0.tar.gz
Windows binaries: r-devel: reproducible_0.2.11.zip, r-devel-gcc8: reproducible_0.2.11.zip, r-release: reproducible_0.2.11.zip, r-oldrel: reproducible_0.2.11.zip
OS X binaries: r-release: reproducible_0.2.11.tgz, r-oldrel: reproducible_0.2.11.tgz
Old sources: reproducible archive

Reverse dependencies:

Reverse depends: SpaDES.core
Reverse imports: SpaDES, SpaDES.addins, SpaDES.tools

Linking:

Please use the canonical form https://CRAN.R-project.org/package=reproducible to link to this page.