knitr: A General-Purpose Package for Dynamic Report Generation in R

Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.

Version: 1.28
Depends: R (≥ 3.2.3)
Imports: evaluate (≥ 0.10), highr, markdown, stringr (≥ 0.6), yaml (≥ 2.1.19), methods, xfun, tools
Suggests: formatR, testit, digest, rgl (≥ 0.95.1201), codetools, rmarkdown, htmlwidgets (≥ 0.7), webshot, tikzDevice (≥ 0.10), tinytex, reticulate (≥ 1.4), JuliaCall (≥ 0.11.1), magick, png, jpeg, gifski, xml2 (≥ 1.2.0), httr, DBI (≥ 0.4-1), showtext, tibble, sass, styler (≥ 1.2.0)
Published: 2020-02-06
Author: Yihui Xie ORCID iD [aut, cre], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto ORCID iD [ctb], Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin ModrĂ¡k [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb]
Maintainer: Yihui Xie <xie at yihui.name>
BugReports: https://github.com/yihui/knitr/issues
License: GPL-2 | GPL-3 [expanded from: GPL]
URL: https://yihui.org/knitr/
NeedsCompilation: no
SystemRequirements: Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() require rst2pdf (https://github.com/rst2pdf/rst2pdf).
Citation: knitr citation info
Materials: README NEWS
In views: ReproducibleResearch
CRAN checks: knitr results

Downloads:

Reference manual: knitr.pdf
Vignettes: Custom Print Methods
Not an Introduction to knitr
knitr Reference Card
Display Tables with the JavaScript Library DataTables
Templating with knit_expand()
An R HTML Vignette with knitr
An R Markdown Vignette with knitr
R Markdown with the Docco Classic Style
R Markdown with the Docco Linear Style
Package source: knitr_1.28.tar.gz
Windows binaries: r-devel: knitr_1.28.zip, r-devel-gcc8: knitr_1.28.zip, r-release: knitr_1.28.zip, r-oldrel: knitr_1.28.zip
OS X binaries: r-release: knitr_1.28.tgz, r-oldrel: knitr_1.28.tgz
Old sources: knitr archive

Reverse dependencies:

Reverse depends: basecallQC, BiocSklearn, DeMixT, docknitr, EasyHTMLReport, frequency, frequencyConnectedness, Guitar, LabRS, NatureSounds, PopGenReport, PSIMEX, ReportingTools, reverseR, rmdHelpers, rrecsys, spThin, svSweave, tab, tufterhandout
Reverse imports: abseqR, ADAM, ADAMgui, adapr, AdhereR, ADPclust, advclust, ahpsurvey, AMARETTO, amplican, AMR, Anaquin, arsenal, assertive, ASSISTant, attachment, automagic, BatchQC, BayesianFROC, BCHM, bcrm, bdchecks, bdclean, beam, BENMMI, BIGDAWG, binb, BiocCheck, BiocStyle, BiocWorkflowTools, BioNetStat, blandr, blkbox, blogdown, bookdown, bookdownplus, brainKCCA, cartools, ccostr, CEMiTool, ceterisParibus, checkdown, cheese, clean, cleaner, codebook, codified, cola, compareGroups, COMPASS, compcodeR, concurve, condformat, condir, confidence, conflr, convergEU, cooccurNet, corto, cpsurvsim, crsra, cystiSim, DAPAR, DAPARdata, dataCompareR, DataPackageR, dccvalidator, DEGreport, dendroTools, details, did, DiscoRhythm, distill, dlookr, dmdScheme, DmelSGI, encryptr, EpiReport, EpiSignalDetection, epitab, esATAC, ezknitr, facerec, factorMerger, fcaR, flexdashboard, flextable, flowAI, flowBeads, flowPloidy, flying, forestRK, formattable, furniture, genogeographer, gglogo, ggPMX, gistr, Gmisc, Greg, gSEM, gtsummary, GWASinspector, gWQS, gWQSRS, helminthR, HMP16SData, HMP2Data, hoardeR, hR, hrbrthemes, htmlTable, iCellR, ideal, igate, iheatmapr, imgrec, ImpulseDE2, inlmisc, interAdapt, IntramiRExploreR, iotables, ivdesc, JSmediation, JuliaCall, kableExtra, kfigr, knitLatex, knitrBootstrap, lazyrmd, learnr, lemon, levi, liftr, lillies, LineagePulse, linguisticsdown, linl, lintr, lipidomeR, MACPET, manipulateWidget, marked, mdapack, memor, MendelianRandomization, metagam, MetaLandSim, metamicrobiomeR, metathis, microsamplingDesign, mindr, MobileTrigger, moderndive, modest, mosaicModel, multisensi, MXM, NACHO, NanoStringQCPro, nanotatoR, ncappc, netSEM, nlraa, omicplotR, Onassis, opencpu, oppti, optiRum, Orcs, orloca, PAFit, panelvar, pathfindR, PathoStat, pcaExplorer, phase1PRMD, PhenStat, pinp, pixiedust, pkgnet, polmineR, polymapR, PreKnitPostHTMLRender, printr, pRoloc, PSF, PTXQC, pysd2r, qcmetrics, qmethod, qPLEXdata, qqplotr, qte, quokar, qwraps2, radiant.data, radix, RagGrid, rAmCharts, rapbase, rasciidoc, rcarbon, RCAS, rchallenge, RcppFaddeeva, Rd2md, rdtLite, regionReport, remedy, REPLesentR, rgl, RITAN, rje, rleafmap, RLumShiny, rmarkdown, rmdformats, rNMF, ROC, roxygen2, Rqc, rsf, RTCGA, rtemps, rticles, rtimicropem, RxODE, SASmarkdown, SBGNview, SBGNview.data, scan, scmeth, scoringRules, scTensor, scTGIF, sdcMicro, sdcTable, SemNetCleaner, ShinyItemAnalysis, shinyr, sjPlot, skimr, skpr, SNSequate, spANOVA, spathial, SpatialEpiApp, spelling, statgenSTA, stationery, statsr, statVisual, steemr, survMisc, synapter, table1, tablerDash, tables, taxa, TCGAbiolinks, tcgaWGBSData.hg19, teachingApps, testcorr, texPreview, text2speech, tibbleOne, tidypredict, tint, TnT, TPP, trelliscopejs, tufte, tutorial, ubiquity, ucbthesis, ufs, umx, userfriendlyscience, vidger, vitae, vote, vqtl, webex, workflowr, xaringan
Reverse suggests: aaSEA, ABACUS, ABAData, ABAEnrichment, abbyyR, ABC.RAP, ABHgenotypeR, abn, AbSim, abstractr, accelerometry, ACE, ace2fastq, acmeR, acnr, ACSNMineR, ActFrag, ActiveDriverWGS, ActivePathways, activityCounts, actuaryr, adaptest, AdaptGauss, adaptiveGPCA, adaptMT, AdaSampling, add2ggplot, addinsOutline, additivityTests, adductData, adductomicsR, adegraphics, adepro, adept, adespatial, adfExplorer, adjclust, admixturegraph, admmDensestSubmatrix, ADMMsigma, adnuts, adoptr, adpss, AeRobiology, afex, AffiXcan, affycoretools, afpt, aGE, AGHmatrix, agridat, agriwater, AHEnsDbs, AHM, ahnr, ahp, aire.zmvm, airGR, airGRteaching, airportr, airqualityES, airr, airway, ajv, akc, akmedoids, ALA4R, alakazam, ALDEx2, alevinQC, alfr, alfred, algorithmia, alignfigR, alleHap, AllelicImbalance, allenpvc, allestimates, alluvial, alookr, alpaca, AlphaBeta, alphabetr, AlphaPart, AlphaSimR, AlphaVantageClient, alphavantager, alpine, alpineData, ALPS, alsace, altair, alterryx, AMARETTO, AMCTestmakeR, ameco, amelie, amen, ammistability, AMModels, AMOUNTAIN, ampir, amt, AnaCoDa, analogsea, AnalysisPageServer, analysisPipelines, anamiR, AncestryMapper, anchoredDistr, AneuFinder, ANF, AnglerCreelSurveySimulation, anim.plots, animalcules, anipaths, AnnotationBustR, AnnotationDbi, AnnotationFilter, AnnotationForge, AnnotationHub, AnnotationHubData, annotatr, ANOM, anomalize, anota2seq, ANOVAreplication, antaresEditObject, antaresProcessing, antaresRead, antaresViz, AnthropMMD, Anthropometry, anyLib, aof, aoos, apa, APAlyzer, apaTables, apcf, apcluster, apeglm, apex, apexcharter, aphid, APIS, aplore3, apollo, apricom, apsimr, apyramid, AQuadtree, ArchaeoChron, ArchaeoPhases, archetypal, archivist, archivist.github, arcos, areal, arena2r, argonR, argparse, ArgumentCheck, ari, ARIbrain, arkdb, arkhe, armspp, ARPobservation, arrangements, arrayQualityMetrics, arrow, artMS, ARTool, aRxiv, ASAFE, asciicast, asciiSetupReader, AshkenazimSonChr21, ashr, ASICS, ASICSdata, ASMap, ASpediaFI, aspi, aSPU, assertable, assertr, AssessORF, AssessORFData, AssetCorr, ASSIGN, assignPOP, assignR, asus, asymmetry, atable, ATACseqQC, atsd, atSNP, attempt, AUCell, auctestr, auditor, augmentedRCBD, auk, aurelius, AUtests, auth0, auto.pca, AutoDeskR, autoimage, automultinomial, autoplotly, autothresholdr, Autotuner, avar, aVirtualTwins, aweek, AWFisher, aws.alexa, awsjavasdk, AzureAuth, AzureCognitive, AzureContainers, AzureGraph, AzureKeyVault, AzureKusto, azuremlsdk, AzureRMR, AzureStor, AzureVision, AzureVM, b3archives, BaalChIP, babar, babette, BACA, BacArena, backbone, backpipe, backShift, bacon, bacondecomp, badgecreatr, baggr, bain, balance, Ball, ballgown, BALLI, ballr, bama, bamlss, BaMORC, bamp, bamsignals, BANDITS, bang, bannerCommenter, banocc, BANOVA, banR, baRcodeR, BARIS, barplot3d, BART, baRulho, BAS, base2grob, base64url, baseballDBR, BASiCS, BasicSTARRseq, basictabler, BASiNET, basket, BASS, batchelor, BatchGetSymbols, batchtools, BaTFLED3D, BAwiR, bayes4psy, bayesAB, bayesanova, BayesCombo, bayesCT, bayesdfa, bayesDP, BayesESS, BayesFactor, BayesGOF, BayesianNetwork, BayesianPower, BayesianTools, bayesImageS, BayesLN, bayesm, BayesMallows, BayesMAMS, bayesmeta, bayesplot, BayesPostEst, bayestestR, BayesVarSel, bayfoxr, baymedr, bayNorm, baytrends, bazar, bbmle, bbricks, bbw, bcaboot, bcdata, BCEA, BCellMA, Bchron, Bclim, BClustLonG, bcmaps, bcpa, bcRep, bcROCsurface, bcSeq, BCSub, bdl, BDMMAcorrect, BDP2, bdpar, bdscale, beachmat, beadarray, BeadDataPackR, beadplexr, beakr, beanz, BEARscc, beastier, beautier, BEclear, bedr, beezdemand, behaviorchange, behavr, benchmarkfdrData2019, benchmarkme, benthos, berryFunctions, bestNormalize, BESTree, betaboost, BetaPASS, BETS, BeviMed, bfw, BgeeDB, BGGM, bggum, BHMSMAfMRI, BHSBVAR, BHTSpack, bib2df, bibliometrix, biclustermd, BICORN, BiDimRegression, BIEN, bife, BiFET, BIGL, bigleaf, bigMap, bigmemoryExtras, bigPint, bigQueryR, bigstep, billboarder, BinarybalancedCut, BinaryDosage, binman, BinMat, binomialMix, binomialRF, binovisualfields, BinQuasi, BinSegBstrap, bio3d, bioacoustics, bioassayR, biobroom, bioC.logs, bioCancer, BiocFileCache, BioCircos, BiocManager, BiocNeighbors, biocompute, BiocOncoTK, BioCor, BiocParallel, BiocPkgTools, BiocSet, BiocSingular, biocViews, biogas, biogram, Bioi, bioimagetools, bioinactivation, BioInstaller, biomaRt, biomartr, BIOMASS, biomformat, BioMM, bioOED, Biopeak, BioQC, bioset, biosigner, biotic, BioTIP, biotmle, bipartite, bipartiteD3, BIRDS, BIS, biscale, biscuiteer, biscuiteerData, bisect, BisqueRNA, BivRec, biwavelet, bizdays, blacksheepr, blaise, BlandAltmanLeh, blastula, blima, blin, BlockCov, blockCV, blockRAR, blocksdesign, BloodCancerMultiOmics2017, blorr, BLPestimatoR, blscrapeR, bmass, bmlm, bmotif, BMRBr, bmrm, BMRSr, bnbc, bnclassify, bnma, BNPdensity, bnpsd, BNrich, bnspatial, bnstruct, bodenmiller, bodymapRat, bold, BoltzMM, bomrang, boostr, borrowr, BoSSA, BOSSreg, boxr, bpa, bpbounds, bpp, BPRMeth, brainflowprobes, brainImageRdata, branchpointer, brazilmaps, breakDown, breakpointR, breakpointRdata, breathtestcore, breathteststan, brendaDb, BRETIGEA, brgedata, brglm2, BridgeDbR, bridgedist, bridgesampling, brinton, briskaR, brms, broom, broom.mixed, broomExtra, brotli, BrowserViz, brranching, brt, brunnermunzel, bs4Dash, bSims, bsplus, bsseq, bssm, bst, BTYD, BTYDplus, BubbleTree, buildmer, bulletcp, BUMHMM, bunching, bunchr, burnr, BUScorrect, busdater, BUSpaRse, butcher, bvartools, bwsTools, bytescircle, c14bazAAR, c2c, c3, C50, caesar, CAGEfightR, CAGEr, CAISEr, calendar, calm, calpassapi, camsRad, caMST, CAMTHC, camtrapR, cancensus, CancerInSilico, CancerSubtypes, candisc, canprot, cansim, canvasXpress, capitalR, captioner, captr, car, caracas, caRamel, carbonate, Cardinal, CardinalWorkflows, careless, caret, caretEnsemble, carpenter, caRpools, CARS, cartograflow, cartography, Cascade, cascsim, casebase, casen, casino, CASMAP, cassandRa, CAST, CATALYST, catchr, cate, categoryCompare, catenary, cati, catmap, cattonum, causaldrf, CausalImpact, causaloptim, CausalR, causalsens, causalweight, Causata, CB2, cbaf, cbar, CBDA, cbsodataR, ccafs, CCAMLRGIS, ccaPP, ccfindR, ccmap, ccRemover, ccrepe, cdata, cde, cder, cdfquantreg, cdparcoord, celaref, celarefData, celda, cellbaseR, CellBench, cellity, CellMixS, cellranger, cellscape, CellScore, CellTrails, cellTree, cellWise, CENFA, Census2016, censusapi, censusr, censusxy, ceRtainty, cetcolor, CGGP, CGPfunctions, ChainLadder, ChAMP, chandwich, charlatan, chebpol, checkmate, checkpoint, checkr, chemCal, ChemmineDrugs, ChemmineOB, ChemmineR, chemmodlab, ChemoSpec, ChemoSpec2D, chest, CHETAH, Chicago, chicane, childesr, childhoodmortality, chilemapas, chillR, chimeraviz, ChIPanalyser, chipenrich, chipenrich.data, ChIPexoQual, chipPCR, ChIPpeakAnno, ChIPseeker, chipseqDBData, ChIPSeqSpike, chisq.posthoc.test, chk, chlorpromazineR, CHNOSZ, cholera, CholWishart, chorrrds, chromoMap, chromstaR, chromswitch, chromVAR, CHRONOS, chronosphere, cicero, CIEE, cifti, cimir, CINdex, CINNA, cinterpolate, circlize, circRNAprofiler, circumplex, cIRT, CISE, ciTools, CityWaterBalance, ciuupi, civis, CJAMP, ckanr, Ckmeans.1d.dp, clarifai, ClassifyR, cleanerR, cleangeo, cleanNLP, cleanr, cleanUpdTSeq, cleaver, clere, clhs, cli, clifford, clifro, climate, climateStability, climatrends, ClimMobTools, ClimProjDiags, climwin, ClinReport, clipr, cliqueMS, CliquePercolation, CLLmethylation, clonotypeR, cloudml, clubSandwich, CluMP, CluMSID, ClussCluster, Cluster.OBeu, clusteredinterference, clusterExperiment, clusterhap, ClusterJudge, clusterlab, clustermole, clustermq, clusternomics, clusterProfiler, ClusterR, ClusterSignificance, ClustGeo, ClustImpute, clustree, ClustVarLV, clustvarsel, cmocean, cmvnorm, cnbdistr, CNEr, cNORM, CNVfilteR, CNVPanelizer, CNVRanger, CNVrd2, CNVScope, coala, coalitions, cobalt, coca, COCOA, cocoreg, cocorresp, coda.base, CodeDepends, codelink, codemetar, CoDiNA, codingMatrices, codyn, coefplot, coenocliner, coexnet, cofad, CoFRA, CoGAPS, cogena, cohorttools, coil, coinmarketcapr, Coinprofile, cointmonitoR, cointReg, colf, collapse, CollapseLevels, collateral, collectArgs, collector, coloc, colorBlindness, colordistance, colorednoise, colorhcplot, colorpatch, colorspace, colorSpec, colourpicker, colourvision, colr, colt, comat, coMET, CommonJavaJars, commonsMath, comorbidity, comparer, ComparisonSurv, compartmap, compboost, compEpiTools, comperank, comperes, completejourney, ComplexHeatmap, complexity, comprehenr, compstatr, comtradr, condusco, condvis2, conf, CONFESS, config, configr, confoundr, confSAM, congressbr, CongreveLamsdell2016, conjurer, conquestr, ConR, consensus, consensusDE, consensusOV, consensusSeekeR, constellation, conStruct, contact, container, contextual, ContourFunctions, contrast, contribution, conumee, convexjlr, convey, CoopGame, CoordinateCleaner, copula, CopulaDTA, CopyNeutralIMA, CopyNumberPlots, coRanking, Corbi, coRdon, coreCT, CoRegFlux, CoRegNet, CornerstoneR, cornet, coronavirus, CoRpower, corpus, corpustools, corr2D, corrcoverage, CorrectOverloadedPeaks, CorReg, corregp, correlation, correlationfunnel, corrgram, corrplot, corrr, cosa, coseq, cosinor, cosinor2, COSMIC.67, cotram, CountClust, countcolors, countfitteR, Countr, countsimQC, countyfloods, countytimezones, countyweather, CovCombR, coveffectsplot, covr, covRNA, cowbell, cowplot, cowsay, coxed, coxmeg, coxphw, coxrt, CPBayes, cPCG, cppRouting, cpr, cptec, cqcr, cr17, cranly, credentials, creditmodel, credule, cregg, CRF, crfsuite, crimedata, crimelinkage, crisprseekplus, CrispRVariants, crmPack, crochet, crone, cronR, CropDetectR, CrossICC, crossmeta, crossrun, CrossScreening, CrossVA, crosswalkr, crplyr, crso, crtests, CRUF, crul, crunch, crunchy, csaw, cSEM, CSFA, csodata, csp, CSTools, ctDNAtools, CTDquerier, ctmcd, ctmle, ctmm, cTRAP, ctrdata, ctsem, ctsGE, CUB, cubature, Cubist, cultevo, cumulocityr, curatedAdipoChIP, curatedAdipoRNA, curatedMetagenomicData, curatedTCGAData, curl, curstatCI, customLayout, customsteps, cusum, cutpointr, cvcqv, cvcrand, CVE, cvequality, cvGEE, cvms, CVXR, cwbtools, cyanoFilter, cycleRtools, cydar, cyphr, CytobankAPI, CytoDx, cytofan, cytofast, cytolib, cytometree, cytominer, CytoML, D3GB, d3heatmap, DAAG, DAAGbio, dabestr, DACF, dad, dada2, dagitty, dagLogo, DAIME, dalmatian, DaMiRseq, damr, dams, dann, danstat, Dark, dartR, dat, data.table, data.tree, Data2LD, DatabaseConnector, DatabionicSwarm, datadigest, DataExplorer, datafsm, datagovsgR, dataMaid, datamaps, dataMeta, dataone, datapack, datapackage.r, datapasta, dataPreparation, dataRetrieval, datarium, datarobot, datasauRus, DataSpaceR, datastepr, datastructures, datasus, dataverse, DataVisualizations, daymetr, dbfaker, DBI, DBItest, dbmss, dbparser, dbplyr, dbscan, dcanr, DCG, dcGSA, DChIPRep, dcmodify, DCPO, dde, ddiv, ddpcr, ddsPLS, DealGPL570, debar, debCAM, deBInfer, debrowser, debugr, decido, decisionSupport, deckgl, DeclareDesign, deco, decode, decoder, DEComplexDisease, decomposedPSF, decompr, decompTumor2Sig, decontam, deconvolveR, deductive, DeepBlueR, deepdep, deepSNV, deflateBR, DEFormats, deGradInfer, deisotoper, delayed, DelayedArray, DelayedDataFrame, DelayedMatrixStats, DeLorean, deltaCaptureC, deltaGseg, demoShiny, dendextend, dendrometeR, dendsort, denoiSeq, denovolyzeR, densratio, denvax, DEP, DepecheR, DepLogo, depmap, DEqMS, derfinder, derfinderData, derfinderHelper, derfinderPlot, derivmkts, DEScan2, DescriptiveStats.OBeu, descriptr, descstatsr, desctable, DESeq2, designr, DEsingle, desiR, desplot, DEsubs, detectRUNS, detectseparation, detrendr, detzrcr, devRate, devtools, DevTreatRules, DEWSeq, DEXSeq, dexter, dextergui, dexterMST, dfadjust, dfoliatR, dfvad, DGCA, dgo, DGVM3D, DHARMa, dhh, DHS.rates, di, diagis, diagonals, DiagrammeR, dialr, dials, diceR, dietr, diezeit, diffcyt, diffdf, diffEnrich, diffeqr, DiffLogo, diffloop, diffloopdata, diffobj, diffpriv, diffrprojects, diffrprojectswidget, DiffusionRgqd, DiffusionRimp, DiffusionRjgqd, diffusr, diffuStats, DiffXTables, digest, dimensionsR, dimRed, dint, dipsaus, DirectEffects, dirichletprocess, dirmcmc, disaggregation, discfrail, disclapmix, discordant, DiscreteFDR, discreteRV, diseasemapping, DisImpact, diskImageR, dispRity, dissever, distantia, distcomp, distcrete, distdichoR, disto, distr, distr6, distrDoc, distributions3, disttools, divDyn, diveMove, divergence, DiversityOccupancy, diyar, dkanr, DLMtool, dlstats, dm, DMCFB, DMCHMM, dMod, DMRcaller, DMRcate, DMRcatedata, DMRScan, dmrseq, DNABarcodeCompatibility, DNABarcodes, DNAshapeR, DNAtools, dnr, dobin, doBy, dockerfiler, docstring, document, documenter, docxtools, dodgr, dominanceanalysis, DominoEffect, donut, doppelgangR, doRedis, doremi, doRNG, Doscheda, DOSE, doseR, dosresmeta, DOT, dotdot, dotwhisker, downloadthis, downsize, dparser, dpcR, dplR, dplyr, dplyr.teradata, dplyrAssist, dqrng, dr4pl, DRAFT, dragon, drake, DramaAnalysis, drat, drawProteins, DrBats, DRHotNet, driftR, DrImpute, DRIMSeq, DrInsight, drLumi, DropletUtils, DRR, drtmle, drugCombo, ds4psy, dsa, DSAIDE, DSAIRM, dscore, dsr, dsrTest, DSS, DSSAT, dssd, DSsim, dst, DT, dtangle, DTAT, DtD, DTDA.ni, dtpcrm, dtplyr, DTSg, dtwclust, duawranglr, DuoClustering2018, DupChecker, dupRadar, dupree, durmod, DVHmetrics, dvmisc, dynamac, dynamichazard, dynCorr, dynfrail, dynOmics, dynr, dynRB, dynsim, dynutils, dynwrap, E4tools, EAinference, eAnalytics, earlyR, earthtide, earthtones, easypackages, easypower, easyPubMed, EasyqpcR, easyRNASeq, easySdcTable, easySVG, easyVerification, EBASS, EbayesThresh, EBglmnet, EBImage, ebirdst, ecb, ECctmc, ecd, Ecfun, ECharts2Shiny, eChem, echo.find, echor, eclust, ecmwfr, EcoDiet, ecodist, ecolottery, economiccomplexity, econullnetr, EcoSimR, ECOSolveR, ecospace, ecospat, ecr, EDA, EDASeq, edbuildr, eddi, eddington, edeaR, edfReader, edfun, edge, edgebundleR, editData, EDOIF, edstan, EdSurvey, eechidna, eegc, EEM, eemR, 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slippymath, SLOPE, slouch, slowraker, slurmR, smacof, SMAD, smapr, smartdata, SmartEDA, smartsizer, smcfcs, SMFilter, smicd, SMITE, SMITIDvisu, smooth, smoothr, smoots, smovie, smpic, smurf, snakecase, snht, snowflakes, snp.plotter, SNPediaR, SNPhood, SNPhoodData, SNPknock, snplist, snpReady, SNPRelate, snpStatsWriter, sobir, SobolSequence, socialmixr, sodium, sofa, softImpute, soGGi, soilcarbon, sojourner, solartime, solrad, solrium, SolveRationalMatrixEquation, SomaticCancerAlterations, SomaticSignatures, SOMbrero, sommer, somspace, SongEvo, sorocs, sortable, SortedEffects, sorvi, sotkanet, soundcorrs, soundecology, soundgen, SourceSet, spacesRGB, spacesXYZ, spacetime, spacey, spacyr, spAddins, SpaDES, SpaDES.addins, SpaDES.core, SpaDES.tools, spaero, spam, Spaniel, spant, spark.sas7bdat, sparkline, SparkR, sparsebn, SparseDC, sparseDOSSA, sparseEigen, sparseHessianFD, sparseIndexTracking, SparseMDC, SparseMSE, sparseMVN, sparsenetgls, SparseSignatures, sparsevar, SPAS, SpatialBall, SpatialBSS, SpatialCPie, SpatialKDE, SpatialPosition, spatialreg, spatialrisk, spatialwidget, spatsoc, spbabel, spBFA, spcadjust, spcosa, spCP, spdep, spdplyr, spduration, spdynmod, speaq, specklestar, specL, specr, spectralGraphTopology, SpectralTAD, Spectrum, sperrorest, spFSR, SpidermiR, spiders, spind, spinifex, spiR, spiritR, splashr, splatter, splines2, splineTimeR, splinetree, SPLINTER, splithalf, splithalfr, splitTools, splot, spm, spm12r, SpNetPrep, spocc, SPONGE, sport, sppmix, spread, spreadr, sprintr, spsann, spsur, spsurvey, SQLDataFrame, SqlRender, sRACIPE, SRGnet, srnadiff, srvyr, ss3sim, sscu, SSDM, ssdtools, ssh, ssizeRNA, SSLR, SSM, SSOSVM, SSP, ssr, ssrch, ssrm.logmer, SSRMST, sstModel, ssviz, stabs, stacomiR, stageR, STAN, standardize, StanHeaders, stapler, StarBioTrek, staRdom, starmie, stars, statar, statcanR, STATegRa, states, statgenGWAS, statip, stats19, statsExpressions, statTarget, stemmatology, STEPCAM, stepR, steps, stevedore, sticky, stlcsb, stminsights, StMoMo, STMotif, stockR, stocks, stokes, stormwindmodel, storr, stoRy, stplanr, stpm, stpp, stR, strandCheckR, strapgod, strataG, stratamatch, Strategy, StratifiedMedicine, stratifyR, streamDepletr, strex, strider, stringb, stringr, strip, stripless, StructFDR, structree, Structstrings, StructuralVariantAnnotation, stubthat, studyStrap, styler, stylest, SubCellBarCode, subformula, SubgrPlots, subgxe, subscreen, subSeq, subtee, SubVis, suddengains, sudokuAlt, sugarbag, sugrrants, SummarizedBenchmark, SummarizedExperiment, summarytools, SUMMER, sunburstR, sundialr, SunsetTSA, supc, SuperExactTest, SuperGauss, superheat, SuperLearner, superml, SuperpixelImageSegmentation, Superpower, suppdata, surv2sampleComp, surveillance, surveybootstrap, surveydata, surveysd, survivalAnalysis, survminer, survParamSim, survPen, survRM2, survSNP, survsup, survtmle, survtype, survxai, sValues, svars, svDialogs, svglite, svGUI, svMisc, SwarmSVM, SWATH2stats, swdft, sweep, sweidnumbr, swephR, swfdr, switchde, swmmr, sylly, symmetry, synergyfinder, synlet, synlik, SynMut, synthACS, systemfonts, systemicrisk, systemPipeR, systemPipeRdata, syuzhet, table.express, TableHC, tableHTML, tableMatrix, tableone, tabr, tabula, TabulaMurisData, tabularaster, tabulizer, tabulog, tacmagic, tactile, tadaatoolbox, tagcloud, taipan, TANDEM, tangles, tangram, target, TargetSearch, TargomoR, tartare, tashu, taskscheduleR, tatoo, taxadb, taxize, taxlist, taxonomizr, TBFmultinomial, tbl2xts, tbm, tbrf, TCA, tcensReg, TCGA2STAT, TCGAbiolinksGUI, TCGAbiolinksGUI.data, TCGAretriever, TCGAutils, TCGAWorkflowData, TcGSA, tcgsaseq, TCIApathfinder, tcl, Tcomp, tcpl, tcR, TDAstats, tealeaves, telegram.bot, tempdisagg, templates, tempoR, Temporal, Tendril, tensorr, tensr, TENxBrainData, TENxBUSData, TENxPBMCData, tenXplore, tergm, Ternary, TESS, tesseract, testassay, TestDesign, testDriveR, tester, TestFunctions, testthat, testthis, TexExamRandomizer, TexMix, text.alignment, text2vec, textdata, textfeatures, 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tlm, TLMoments, tmap, TMixClust, tmle.npvi, tmod, tmt, TNBC.CMS, TOAST, tofsims, tofsimsData, togglr, tokenizers, toOrdinal, ToPASeq, topconfects, topdownr, topicdoc, TopKLists, topoDistance, tor, tosca, TOSTER, totalcensus, TotalCopheneticIndex, toxEval, tpAUC, TPD, TPP2D, tracerer, trackdem, trackdf, trackeR, trackr, tracktables, trackViewer, trade, tradeSeq, tradestatistics, TrafficBDE, traineR, traitdataform, traits, TrajDataMining, trajectories, trajr, tram, tramME, tramnet, transcribeR, transcriptogramer, transcriptR, transite, transplantr, trawl, tree.bins, tree.interpreter, treebase, TreeBUGS, treeDA, treedater, treefit, treeio, treemap, treemapify, treenomial, TreeSearch, TreeSimGM, treespace, treestartr, treestructure, TreeSummarizedExperiment, TreeTools, trekcolors, trelloR, trena, trendchange, Trendy, TriadSim, trialr, triangle, tribe, tricolore, triebeard, trimmer, trimr, trinROC, trip, tRNA, tRNAdbImport, tRNAscanImport, TRONCO, TropFishR, tRophicPosition, trread, 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valueEQ5D, valuer, vamc, VancouvR, vanddraabe, vapour, varband, VarBundle, varbvs, varclust, VarfromPDB, variancePartition, VariantExperiment, varitas, varrank, VarSelLCM, varsExplore, VARshrink, VARsignR, varTestnlme, varycoef, vaultr, VBTree, VCA, VCFArray, vcfR, vcr, vctrs, vcvComp, vdg, VDJgermlines, vegalite, vegan, vegawidget, vegclust, vegdata, vein, vembedr, VennDetail, vetr, vfcp, VFP, VFS, vimp, vinereg, vioplot, vip, viridis, viromeBrowser, virtualNicheR, virtualPollen, virustotal, visdat, ViSEAGO, ViSiElse, visit, visNetwork, visreg, vistime, visTree, vistributions, Visualize.CRAN.Downloads, vivo, VLTimeCausality, volleystat, vortexR, voteogram, vpc, vroom, VSE, vsgoftest, vsn, vtable, vtreat, vtree, VWPre, waccR, waddR, walker, wallace, warbleR, warp, washdata, water, WaterML, waterquality, wavClusteR, waveformlidar, WaveSampling, wbstats, WCM, wCorr, wdman, wdpar, weathercan, weathermetrics, webglobe, webr, webreadr, webshot, websocket, weco, wedge, weibulltools, WeightedCluster, WeightIt, wellknown, WeMix, wgaim, WgtEff, wheatmap, whereami, WhiteStripe, whoa, whoapi, wicket, widgetframe, widyr, wiesbaden, wiggleplotr, WikidataR, wikilake, wikipediatrend, WikipediR, wikisourcer, wikitaxa, wildcard, wildlifeDI, wilson, WindCurves, wiod, WiSEBoot, wiseR, withr, womblR, wooldridge, wordbankr, wordcloud2, WordR, wordspace, workflows, worrms, wosr, wql, WR, wrapr, wrassp, Wrench, WRS2, wrswoR, wrswoR.benchmark, WRTDStidal, wsrf, wsyn, wTO, WufooR, wv, WVPlots, wwntests, wyz.code.metaTesting, wyz.code.offensiveProgramming, wyz.code.rdoc, wyz.code.testthat, x3ptools, xbreed, XBSeq, XCIR, xcms, xesreadR, Xeva, xfun, xgb2sql, xgboost, xgxr, XiMpLe, XINA, xlink, xlsx, xlsx2dfs, xml2, xmrr, xnet, XNomial, xpectr, xpose, XRJulia, xrnet, xROI, xseq, xspliner, xtable, xtune, xyloplot, xyz, yakmoR, yamlet, yamss, YAPSA, yardstick, yarn, yarrr, yatah, ymlthis, youtubecaption, ypr, yriMulti, yummlyr, zalpha, zeallot, zebrafishRNASeq, zebu, zeitgebr, zFactor, zFPKM, ZIBBSeqDiscovery, zinbwave, zipR, ZipRadius, ZOIP, zoltr, zooaRch, zooaRchGUI, zoocat, zoomgrid, zoon, zscorer, ztable, zzlite
Reverse enhances: collapsibleTree, htmltools, kimisc, networkD3, patchSynctex, svgPanZoom, threejs

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