CRAN Package Check Results for Package xhmmScripts

Last updated on 2020-05-29 17:49:21 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 4.38 28.08 32.46 NOTE
r-devel-linux-x86_64-debian-gcc 1.1 3.42 22.44 25.86 NOTE
r-devel-linux-x86_64-fedora-clang 1.1 40.15 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1 38.82 NOTE
r-devel-windows-ix86+x86_64 1.1 12.00 52.00 64.00 NOTE
r-patched-linux-x86_64 1.1 3.47 27.87 31.34 NOTE
r-patched-solaris-x86 1.1 58.60 NOTE
r-release-linux-x86_64 1.1 4.25 27.96 32.21 NOTE
r-release-osx-x86_64 1.1 NOTE
r-release-windows-ix86+x86_64 1.1 8.00 57.00 65.00 NOTE
r-oldrel-osx-x86_64 1.1 NOTE
r-oldrel-windows-ix86+x86_64 1.1 11.00 42.00 53.00 NOTE

Check Details

Version: 1.1
Check: R code for possible problems
Result: NOTE
    XHMM_plots: no visible global function definition for 'pdf'
    XHMM_plots: no visible global function definition for 'hist'
    XHMM_plots: no visible global function definition for 'dev.off'
    XHMM_plots: no visible global function definition for 'cor'
    XHMM_plots: no visible global function definition for 'rainbow'
    XHMM_plots: no visible global function definition for 'matplot'
    XHMM_plots: no visible global function definition for 'points'
    XHMM_plots: no visible global function definition for 'legend'
    XHMM_plots: no visible global function definition for 'par'
    XHMM_plots: no visible binding for global variable 'sd'
    col2rgbString: no visible global function definition for 'col2rgb'
    col2rgbString : <anonymous>: no visible global function definition for
     'rgb'
    loadTargetsToGenes: no visible global function definition for
     'read.table'
    loadXCNVcalls: no visible global function definition for 'read.table'
    plotAllChromosomeValues: no visible global function definition for
     'png'
    plotAllChromosomeValues: no visible global function definition for
     'axis'
    plotAllChromosomeValues: no visible global function definition for
     'dev.off'
    plot_XHMM_targets_helper: no visible global function definition for
     'graphics.off'
    plot_XHMM_targets_helper: no visible global function definition for
     'heat.colors'
    plot_XHMM_targets_helper: no visible global function definition for
     'pdf'
    plot_XHMM_targets_helper: no visible global function definition for
     'png'
    plot_XHMM_targets_helper: no visible global function definition for
     'par'
    plot_XHMM_targets_helper: no visible global function definition for
     't.test'
    plot_XHMM_targets_helper: no visible global function definition for
     'points'
    plot_XHMM_targets_helper: no visible global function definition for
     'grconvertY'
    plot_XHMM_targets_helper: no visible global function definition for
     'segments'
    plot_XHMM_targets_helper: no visible global function definition for
     'text'
    plot_XHMM_targets_helper: no visible global function definition for
     'legend'
    plot_XHMM_targets_helper: no visible global function definition for
     'dev.off'
    plot_XHMM_targets_helper: no visible global function definition for
     'layout'
    plot_XHMM_targets_helper: no visible global function definition for
     'layout.show'
    plot_XHMM_targets_helper: no visible global function definition for
     'plot.new'
    readPedigreeFile: no visible global function definition for
     'read.table'
    readPhenotypesFile: no visible global function definition for
     'read.table'
    Undefined global functions or variables:
     axis col2rgb cor dev.off graphics.off grconvertY heat.colors hist
     layout layout.show legend matplot par pdf plot.new png points rainbow
     read.table rgb sd segments t.test text
    Consider adding
     importFrom("grDevices", "col2rgb", "dev.off", "graphics.off",
     "heat.colors", "pdf", "png", "rainbow", "rgb")
     importFrom("graphics", "axis", "grconvertY", "hist", "layout",
     "layout.show", "legend", "matplot", "par", "plot.new",
     "points", "segments", "text")
     importFrom("stats", "cor", "sd", "t.test")
     importFrom("utils", "read.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-release-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    XHMM_plots: no visible global function definition for ‘pdf’
    XHMM_plots: no visible global function definition for ‘hist’
    XHMM_plots: no visible global function definition for ‘dev.off’
    XHMM_plots: no visible global function definition for ‘cor’
    XHMM_plots: no visible global function definition for ‘rainbow’
    XHMM_plots: no visible global function definition for ‘matplot’
    XHMM_plots: no visible global function definition for ‘points’
    XHMM_plots: no visible global function definition for ‘legend’
    XHMM_plots: no visible global function definition for ‘par’
    XHMM_plots: no visible global function definition for ‘plot’
    XHMM_plots: no visible binding for global variable ‘sd’
    col2rgbString: no visible global function definition for ‘col2rgb’
    col2rgbString : <anonymous>: no visible global function definition for
     ‘rgb’
    loadTargetsToGenes: no visible global function definition for
     ‘read.table’
    loadXCNVcalls: no visible global function definition for ‘read.table’
    plotAllChromosomeValues: no visible global function definition for
     ‘png’
    plotAllChromosomeValues: no visible global function definition for
     ‘plot’
    plotAllChromosomeValues: no visible global function definition for
     ‘axis’
    plotAllChromosomeValues: no visible global function definition for
     ‘dev.off’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘graphics.off’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘heat.colors’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘pdf’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘png’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘par’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘plot’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘t.test’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘points’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘grconvertY’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘segments’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘text’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘legend’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘dev.off’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘layout’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘layout.show’
    plot_XHMM_targets_helper: no visible global function definition for
     ‘plot.new’
    readPedigreeFile: no visible global function definition for
     ‘read.table’
    readPhenotypesFile: no visible global function definition for
     ‘read.table’
    Undefined global functions or variables:
     axis col2rgb cor dev.off graphics.off grconvertY heat.colors hist
     layout layout.show legend matplot par pdf plot plot.new png points
     rainbow read.table rgb sd segments t.test text
    Consider adding
     importFrom("grDevices", "col2rgb", "dev.off", "graphics.off",
     "heat.colors", "pdf", "png", "rainbow", "rgb")
     importFrom("graphics", "axis", "grconvertY", "hist", "layout",
     "layout.show", "legend", "matplot", "par", "plot",
     "plot.new", "points", "segments", "text")
     importFrom("stats", "cor", "sd", "t.test")
     importFrom("utils", "read.table")
    to your NAMESPACE file.
Flavors: r-oldrel-osx-x86_64, r-oldrel-windows-ix86+x86_64