CRAN Package Check Results for Package glmnetUtils

Last updated on 2020-03-30 20:48:29 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.5 7.51 120.18 127.69 OK
r-devel-linux-x86_64-debian-gcc 1.1.5 6.39 90.32 96.71 OK
r-devel-linux-x86_64-fedora-clang 1.1.5 151.89 OK
r-devel-linux-x86_64-fedora-gcc 1.1.5 158.27 OK
r-devel-windows-ix86+x86_64 1.1.5 16.00 137.00 153.00 OK
r-devel-windows-ix86+x86_64-gcc8 1.1.5 14.00 133.00 147.00 OK
r-patched-linux-x86_64 1.1.5 7.33 116.55 123.88 OK
r-patched-solaris-x86 1.1.5 297.30 OK
r-release-linux-x86_64 1.1.5 7.14 107.23 114.37 OK
r-release-windows-ix86+x86_64 1.1.5 17.00 183.00 200.00 OK
r-release-osx-x86_64 1.1.5 OK
r-oldrel-windows-ix86+x86_64 1.1.5 11.00 162.00 173.00 ERROR
r-oldrel-osx-x86_64 1.1.5 ERROR

Check Details

Version: 1.1.5
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: 'glmnet::relax.glmnet'
Flavors: r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1.5
Check: examples
Result: ERROR
    Running examples in 'glmnetUtils-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: cv.glmnet
    > ### Title: Formula interface for elastic net cross-validation with
    > ### cv.glmnet
    > ### Aliases: cv.glmnet cv.glmnet.default cv.glmnet.formula
    > ### predict.cv.glmnet.formula coef.cv.glmnet.formula
    > ### print.cv.glmnet.formula predict.cv.relaxed.formula
    > ### coef.cv.relaxed.formula
    >
    > ### ** Examples
    >
    > cv.glmnet(mpg ~ ., data=mtcars)
    Error in glmnet(x, y, weights = weights, offset = offset, lambda = lambda, :
     unused arguments (gamma = gamma, relax = relax)
    Calls: cv.glmnet -> cv.glmnet.formula -> <Anonymous>
    Execution halted
Flavors: r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1.5
Check: tests
Result: ERROR
     Running 'testthat.R' [24s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv(R_TESTS="") # needed for cluster creation to work
     >
     > library(testthat)
     > library(glmnetUtils)
     >
     > test_check("glmnetUtils")
     -- 1. Error: (unknown) (@test2_cv_glmnet.R#11) --------------------------------
     unused arguments (gamma = gamma, relax = relax)
     Backtrace:
     1. glmnetUtils::cv.glmnet(...)
     2. glmnetUtils:::cv.glmnet.formula(...)
     3. glmnet::cv.glmnet(...)
    
     -- 2. Error: mismatched factor levels work, cv.glmnet (@test4_predict.R#35) ---
     unused arguments (gamma = gamma, relax = relax)
     Backtrace:
     1. glmnetUtils::cv.glmnet(y ~ x, df, lambda = l, use.model.frame = TRUE)
     2. glmnetUtils:::cv.glmnet.formula(y ~ x, df, lambda = l, use.model.frame = TRUE)
     3. glmnet::cv.glmnet(...)
    
     -- 3. Error: relaxed glmnet works (@test5_relaxed.R#7) ------------------------
     unused argument (relax = TRUE)
    
     -- 4. Error: relaxed glmnet works with weights and offset (@test5_relaxed.R#21)
     unused argument (relax = TRUE)
    
     -- 5. Error: relaxed predict and coef work (@test5_relaxed.R#35) --------------
     unused argument (relax = TRUE)
     Backtrace:
     1. glmnetUtils::glmnet(x, y, family = "multinomial", relax = TRUE)
     2. glmnetUtils:::glmnet.default(x, y, family = "multinomial", relax = TRUE)
    
     -- 6. Error: relaxed predict and coef work with nondefault gamma (@test5_relaxed
     unused argument (relax = TRUE)
     Backtrace:
     1. glmnetUtils::glmnet(x, y, family = "multinomial", relax = TRUE)
     2. glmnetUtils:::glmnet.default(x, y, family = "multinomial", relax = TRUE)
    
     -- 7. Error: (unknown) (@test6_relaxed_cv.R#7) --------------------------------
     unused arguments (gamma = (0:3)/3, relax = TRUE)
     Backtrace:
     1. glmnet::cv.glmnet(...)
    
     == testthat results ===========================================================
     [ OK: 105 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: (unknown) (@test2_cv_glmnet.R#11)
     2. Error: mismatched factor levels work, cv.glmnet (@test4_predict.R#35)
     3. Error: relaxed glmnet works (@test5_relaxed.R#7)
     4. Error: relaxed glmnet works with weights and offset (@test5_relaxed.R#21)
     5. Error: relaxed predict and coef work (@test5_relaxed.R#35)
     6. Error: relaxed predict and coef work with nondefault gamma (@test5_relaxed.R#54)
     7. Error: (unknown) (@test6_relaxed_cv.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.1.5
Check: tests
Result: ERROR
     Running ‘testthat.R’ [9s/13s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     Backtrace:
     1. glmnet::cv.glmnet(...)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 105 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: (unknown) (@test2_cv_glmnet.R#11)
     2. Error: mismatched factor levels work, cv.glmnet (@test4_predict.R#35)
     3. Error: relaxed glmnet works (@test5_relaxed.R#7)
     4. Error: relaxed glmnet works with weights and offset (@test5_relaxed.R#21)
     5. Error: relaxed predict and coef work (@test5_relaxed.R#35)
     6. Error: relaxed predict and coef work with nondefault gamma (@test5_relaxed.R#54)
     7. Error: (unknown) (@test6_relaxed_cv.R#7)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64