CRAN Package Check Results for Package dimRed

Last updated on 2020-05-28 03:48:26 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.3 23.73 277.06 300.79 OK
r-devel-linux-x86_64-debian-gcc 0.2.3 16.81 206.23 223.04 OK
r-devel-linux-x86_64-fedora-clang 0.2.3 374.02 OK
r-devel-linux-x86_64-fedora-gcc 0.2.3 375.79 OK
r-devel-windows-ix86+x86_64 0.2.3 43.00 381.00 424.00 OK
r-patched-linux-x86_64 0.2.3 19.65 263.50 283.15 OK
r-patched-solaris-x86 0.2.3 472.10 OK
r-release-linux-x86_64 0.2.3 20.67 266.25 286.92 OK
r-release-osx-x86_64 0.2.3 NOTE
r-release-windows-ix86+x86_64 0.2.3 31.00 368.00 399.00 OK
r-oldrel-osx-x86_64 0.2.3 NOTE
r-oldrel-windows-ix86+x86_64 0.2.3 30.00 271.00 301.00 ERROR

Check Details

Version: 0.2.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘pcaL1’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.3
Check: tests
Result: ERROR
     Running 'testthat.R' [138s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(dimRed)
     Loading required package: DRR
     Loading required package: kernlab
     Loading required package: CVST
     Loading required package: Matrix
    
     Attaching package: 'dimRed'
    
     The following object is masked from 'package:stats':
    
     embed
    
     The following object is masked from 'package:base':
    
     as.data.frame
    
     >
     > test_check("dimRed", reporter = LocationReporter)
     Start test: HLLE
     test_HLLE.R#4:1 [success]
     End test: HLLE
    
     Start test: general data conversions
     test_ICA.R#6:1 [success]
     test_ICA.R#9:1 [success]
     test_ICA.R#11:1 [success]
     test_ICA.R#13:1 [success]
     test_ICA.R#15:1 [success]
     test_ICA.R#21:1 [success]
     End test: general data conversions
    
     Start test: 2D projection
     test_NNMF.R#22:1 [success]
     test_NNMF.R#42:1 [success]
     test_NNMF.R#61:1 [success]
     test_NNMF.R#62:1 [success]
     End test: 2D projection
    
     Start test: other arguments
     test_NNMF.R#107:1 [success]
     test_NNMF.R#108:1 [success]
     test_NNMF.R#134:1 [success]
     test_NNMF.R#135:1 [success]
     End test: other arguments
    
     Start test: Bad args
     test_NNMF.R#142:1 [success]
     test_NNMF.R#143:1 [success]
     test_NNMF.R#145:1 [success]
     test_NNMF.R#147:1 [success]
     End test: Bad args
    
     Start test: Full_rank
     test_NNMF.R#156:1 [success]
     End test: Full_rank
    
     Start test: general data conversions
     test_PCA.R#6:1 [success]
     test_PCA.R#18:1 [success]
     test_PCA.R#19:1 [success]
     test_PCA.R#20:1 [success]
     test_PCA.R#21:1 [success]
     test_PCA.R#23:1 [success]
     test_PCA.R#24:1 [success]
     test_PCA.R#25:1 [success]
     test_PCA.R#26:1 [success]
     test_PCA.R#28:1 [success]
     test_PCA.R#29:1 [success]
     test_PCA.R#30:1 [success]
     test_PCA.R#31:1 [success]
     test_PCA.R#33:1 [success]
     test_PCA.R#38:1 [success]
     test_PCA.R#43:1 [success]
     test_PCA.R#48:1 [success]
     test_PCA.R#55:1 [success]
     test_PCA.R#59:1 [success]
     test_PCA.R#63:1 [success]
     test_PCA.R#67:1 [success]
     End test: general data conversions
    
     Start test: general data conversions
     test_PCA_L1.R#7:1 [success]
     test_PCA_L1.R#19:1 [success]
     test_PCA_L1.R#20:1 [success]
     test_PCA_L1.R#21:1 [success]
     test_PCA_L1.R#22:1 [success]
     test_PCA_L1.R#24:1 [success]
     test_PCA_L1.R#25:1 [success]
     test_PCA_L1.R#26:1 [success]
     test_PCA_L1.R#27:1 [success]
     test_PCA_L1.R#29:1 [success]
     test_PCA_L1.R#30:1 [success]
     test_PCA_L1.R#31:1 [success]
     test_PCA_L1.R#32:1 [success]
     test_PCA_L1.R#34:1 [success]
     test_PCA_L1.R#39:1 [success]
     test_PCA_L1.R#44:1 [success]
     test_PCA_L1.R#49:1 [success]
     test_PCA_L1.R#56:1 [success]
     test_PCA_L1.R#63:1 [success]
     test_PCA_L1.R#70:1 [success]
     test_PCA_L1.R#76:1 [success]
     test_PCA_L1.R#83:1 [success]
     End test: general data conversions
    
     Start test: high level functions working?
     test_all.R#19:1 [warning]
     test_all.R#19:1 [warning]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#40:1 [success]
     test_all.R#42:1 [success]
     test_all.R#43:1 [success]
     End test: high level functions working?
    
     Start test: Check if tensorflow is installed correctly.
     test_autoencoder.R#16:1 [warning]
     test_autoencoder.R#16:1 [skip]
     End test: Check if tensorflow is installed correctly.
    
     Start test: Check errors when building autoencoder.
     test_autoencoder.R#35:1 [warning]
     test_autoencoder.R#35:1 [skip]
     End test: Check errors when building autoencoder.
    
     Start test: using autoencoder with parameters
     test_autoencoder.R#53:1 [warning]
     test_autoencoder.R#53:1 [skip]
     End test: using autoencoder with parameters
    
     Start test: using autoencoder with autoencoder results
     test_autoencoder.R#136:1 [warning]
     test_autoencoder.R#136:1 [skip]
     End test: using autoencoder with autoencoder results
    
     Start test: using autoencoder with keras
     test_autoencoder.R#164:1 [warning]
     test_autoencoder.R#164:1 [skip]
     End test: using autoencoder with keras
    
     Start test: datasets load
     test_dataSets.R#7:1 [success]
     test_dataSets.R#7:1 [success]
     test_dataSets.R#7:1 [success]
     test_dataSets.R#7:1 [success]
     test_dataSets.R#7:1 [success]
     test_dataSets.R#7:1 [success]
     test_dataSets.R#7:1 [success]
     test_dataSets.R#7:1 [success]
     test_dataSets.R#7:1 [success]
     test_dataSets.R#7:1 [success]
     test_dataSets.R#7:1 [success]
     End test: datasets load
    
     Start test: DiffusionMaps
     test_diffmap.R#4:1 [success]
     test_diffmap.R#9:1 [success]
     End test: DiffusionMaps
    
     Start test: constructor
     test_dimRedData.R#5:1 [success]
     test_dimRedData.R#9:1 [success]
     test_dimRedData.R#10:1 [success]
     test_dimRedData.R#11:1 [success]
     test_dimRedData.R#12:1 [success]
     End test: constructor
    
     Start test: conversion functions
     test_dimRedData.R#16:1 [success]
     test_dimRedData.R#17:1 [success]
     test_dimRedData.R#18:1 [success]
     test_dimRedData.R#20:1 [success]
     End test: conversion functions
    
     Start test: misc functions
     test_dimRedData.R#28:1 [success]
     test_dimRedData.R#29:1 [success]
     test_dimRedData.R#32:1 [success]
     test_dimRedData.R#33:1 [success]
     test_dimRedData.R#34:1 [success]
     test_dimRedData.R#35:1 [success]
     End test: misc functions
    
     Start test: pars matching
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#6:1 [success]
     test_dimRedMethod-class.R#15:1 [success]
     End test: pars matching
    
     Start test: predict/inverse methods
     test_dimRedResult.R#9:1 [success]
     test_dimRedResult.R#10:1 [success]
     test_dimRedResult.R#13:1 [success]
     test_dimRedResult.R#14:1 [success]
     End test: predict/inverse methods
    
     Start test: conversion
     test_dimRedResult.R#19:1 [success]
     End test: conversion
    
     Start test: drr forward and backward passes
     test_drr.R#11:1 [success]
     test_drr.R#15:1 [success]
     End test: drr forward and backward passes
    
     Start test: standard method is PCA
     test_embed.R#7:1 [success]
     End test: standard method is PCA
    
     Start test: check vs vegan isomap
     test_isomap.R#36:1 [success]
     End test: check vs vegan isomap
    
     Start test: check other.data
     test_isomap.R#45:1 [error]
     End test: check other.data
    
     Start test: general data conversions
     test_kPCA.R#8:1 [success]
     test_kPCA.R#56:1 [success]
     test_kPCA.R#56:1 [success]
     test_kPCA.R#56:1 [success]
     test_kPCA.R#56:1 [success]
     test_kPCA.R#56:1 [success]
     test_kPCA.R#56:1 [success]
     test_kPCA.R#56:1 [success]
     test_kPCA.R#56:1 [success]
     test_kPCA.R#56:1 [success]
     test_kPCA.R#84:1 [success]
     End test: general data conversions
    
     Start test: squared euclidean distance
     test_misc.R#9:1 [success]
     End test: squared euclidean distance
    
     Start test: formula functions
     test_misc.R#16:1 [success]
     test_misc.R#17:1 [success]
     End test: formula functions
    
     Start test: makeEpsGraph
     test_misc.R#29:1 [success]
     test_misc.R#30:1 [success]
     test_misc.R#31:1 [success]
     End test: makeEpsGraph
    
     Start test: getRotationMatrixFail
     test_misc.R#37:1 [success]
     test_misc.R#41:1 [success]
     End test: getRotationMatrixFail
    
     Start test: quality
     test_quality.R#24:1 [success]
     test_quality.R#24:1 [success]
     test_quality.R#24:1 [success]
     test_quality.R#24:1 [success]
     test_quality.R#24:1 [success]
     test_quality.R#24:1 [success]
     test_quality.R#24:1 [success]
     End test: quality
    
     Start test: Q_local ndim
     test_quality.R#35:1 [success]
     End test: Q_local ndim
    
     Start test: rmse_by_ndim
     test_quality.R#52:1 [success]
     test_quality.R#52:1 [success]
     test_quality.R#52:1 [success]
     test_quality.R#52:1 [success]
     test_quality.R#60:1 [success]
     test_quality.R#61:1 [success]
     End test: rmse_by_ndim
    
     Start test: AUC_lnK_R_NX
     test_quality.R#72:1 [warning]
     test_quality.R#72:1 [success]
     test_quality.R#73:1 [warning]
     test_quality.R#73:1 [success]
     test_quality.R#74:1 [warning]
     test_quality.R#74:1 [success]
     test_quality.R#75:1 [warning]
     test_quality.R#75:1 [success]
     test_quality.R#77:1 [success]
     test_quality.R#78:1 [success]
     End test: AUC_lnK_R_NX
    
     Start test: UMAP python
     test_umap.R#11:1 [warning]
     test_umap.R#11:1 [skip]
     End test: UMAP python
    
     Start test: UMAP R
     test_umap.R#23:1 [success]
     test_umap.R#24:1 [success]
     test_umap.R#25:1 [success]
     test_umap.R#26:1 [success]
     test_umap.R#27:1 [success]
     test_umap.R#28:1 [success]
     End test: UMAP R
    
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64