CRAN Package Check Results for Package dabestr

Last updated on 2020-03-30 20:48:25 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.4 21.97 249.89 271.86 OK
r-devel-linux-x86_64-debian-gcc 0.2.4 15.83 178.25 194.08 OK
r-devel-linux-x86_64-fedora-clang 0.2.4 294.00 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.4 290.06 NOTE
r-devel-windows-ix86+x86_64 0.2.3 18.00 106.00 124.00 ERROR
r-devel-windows-ix86+x86_64-gcc8 0.2.4 14.00 244.00 258.00 OK
r-patched-linux-x86_64 0.2.4 19.78 241.32 261.10 OK
r-patched-solaris-x86 0.2.4 449.60 NOTE
r-release-linux-x86_64 0.2.4 17.97 239.05 257.02 OK
r-release-windows-ix86+x86_64 0.2.4 16.00 460.00 476.00 OK
r-release-osx-x86_64 0.2.4 NOTE
r-oldrel-windows-ix86+x86_64 0.2.4 13.00 449.00 462.00 ERROR
r-oldrel-osx-x86_64 0.2.4 ERROR

Check Details

Version: 0.2.4
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘plyr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.3
Check: examples
Result: ERROR
    Running examples in 'dabestr-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: dabest
    > ### Title: Differences between Groups with Bootstrap Confidence Intervals
    > ### Aliases: dabest
    >
    > ### ** Examples
    >
    >
    > # Performing unpaired (two independent groups) analysis.
    > unpaired_mean_diff <- dabest(iris, Species, Petal.Width,
    + idx = c("setosa", "versicolor"),
    + paired = FALSE)
    >
    > # Display the results in a user-friendly format.
    > unpaired_mean_diff
    DABEST (Data Analysis with Bootstrap Estimation) v0.2.3
    =======================================================
    
    Variable: Petal.Width
    
    Unpaired mean difference of versicolor (n=50) minus setosa (n=50)
     1.08 [95CI 1.01; 1.14]
    
    
    5000 bootstrap resamples.
    All confidence intervals are bias-corrected and accelerated.
    
    >
    > # Produce an estimation plot.
    > plot(unpaired_mean_diff)
    Error in loadNamespace(name) : there is no package called 'plyr'
    Calls: plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.3
Check: tests
Result: ERROR
     Running 'testthat.R' [55s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(dabestr)
     Loading required package: boot
     Loading required package: magrittr
    
     Attaching package: 'magrittr'
    
     The following objects are masked from 'package:testthat':
    
     equals, is_less_than, not
    
     >
     > test_check("dabestr")
     -- 1. Error: Gardner-Altman custom aesthetics (@test-aesthetics.R#24) ---------
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(...)
     2. dabestr:::plot.dabest(...)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 2. Error: Cumming custom aesthetics (@test-aesthetics.R#135) ---------------
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(...)
     2. dabestr:::plot.dabest(...)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 3. Error: Cumming two-groups unpaired (@test-cumming-plots.R#14) -----------
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(unpaired, color.column = Gender, float.contrast = FALSE)
     2. dabestr:::plot.dabest(unpaired, color.column = Gender, float.contrast = FALSE)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 4. Error: Cumming two-groups paired (@test-cumming-plots.R#33) -------------
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(paired, color.column = Gender, float.contrast = FALSE)
     2. dabestr:::plot.dabest(paired, color.column = Gender, float.contrast = FALSE)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 5. Error: Cumming multi two-groups unpaired (@test-cumming-plots.R#53) -----
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(multi.two.group.unpaired, color.column = Gender)
     2. dabestr:::plot.dabest(multi.two.group.unpaired, color.column = Gender)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 6. Error: Cumming multi two-groups paired (@test-cumming-plots.R#73) -------
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(multi.two.group.paired, color.column = Gender, slopegraph = TRUE)
     2. dabestr:::plot.dabest(...)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 7. Error: Cumming shared control (@test-cumming-plots.R#102) ---------------
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(shared.control, color.column = Gender)
     2. dabestr:::plot.dabest(shared.control, color.column = Gender)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 8. Error: Cumming multi-group shared control (@test-cumming-plots.R#123) ---
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(multi.group.shared.control, color.column = Gender)
     2. dabestr:::plot.dabest(multi.group.shared.control, color.column = Gender)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 9. Error: Gardner-Altman unpaired (@test-gardner-altman-plots.R#14) --------
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(unpaired, color.column = Gender)
     2. dabestr:::plot.dabest(unpaired, color.column = Gender)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 10. Error: Gardner-Altman unpaired reverse (@test-gardner-altman-plots.R#30)
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(unpaired, color.column = Gender)
     2. dabestr:::plot.dabest(unpaired, color.column = Gender)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 11. Error: Gardner-Altman paired (@test-gardner-altman-plots.R#46) ---------
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(paired, color.column = Gender)
     2. dabestr:::plot.dabest(paired, color.column = Gender)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 12. Error: Gardner-Altman paired reverse (@test-gardner-altman-plots.R#63) -
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(paired, color.column = Gender)
     2. dabestr:::plot.dabest(paired, color.column = Gender)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     -- 13. Error: Using `grp` as x column is kosher (@test-unquoting.R#57) --------
     there is no package called 'plyr'
     Backtrace:
     1. base::plot(df_analysed)
     2. dabestr:::plot.dabest(df_analysed)
     3. cowplot::plot_grid(...)
     4. cowplot::align_plots(...)
     5. base::lapply(...)
     6. cowplot:::FUN(X[[i]], ...)
     8. cowplot:::as_gtable.default(x)
     10. cowplot:::as_grob.ggplot(plot)
     11. ggplot2::ggplotGrob(plot)
     13. ggplot2:::ggplot_gtable.ggplot_built(ggplot_build(x))
     ...
     28. self$draw_group(group, panel_params, coord, ...)
     29. dabestr:::f(...)
     31. plyr::arrange
     32. base::getExportedValue(pkg, name)
     33. base::asNamespace(ns)
     34. base::getNamespace(ns)
     35. base::loadNamespace(name)
     36. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
     37. base:::withOneRestart(expr, restarts[[1L]])
     38. base:::doWithOneRestart(return(expr), restart)
    
     == testthat results ===========================================================
     [ OK: 22 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 13 ]
     1. Error: Gardner-Altman custom aesthetics (@test-aesthetics.R#24)
     2. Error: Cumming custom aesthetics (@test-aesthetics.R#135)
     3. Error: Cumming two-groups unpaired (@test-cumming-plots.R#14)
     4. Error: Cumming two-groups paired (@test-cumming-plots.R#33)
     5. Error: Cumming multi two-groups unpaired (@test-cumming-plots.R#53)
     6. Error: Cumming multi two-groups paired (@test-cumming-plots.R#73)
     7. Error: Cumming shared control (@test-cumming-plots.R#102)
     8. Error: Cumming multi-group shared control (@test-cumming-plots.R#123)
     9. Error: Gardner-Altman unpaired (@test-gardner-altman-plots.R#14)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'using-dabestr.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 82-83 (using-dabestr.Rmd)
    Error: processing vignette 'using-dabestr.Rmd' failed with diagnostics:
    there is no package called 'plyr'
    --- failed re-building 'using-dabestr.Rmd'
    
    SUMMARY: processing the following file failed:
     'using-dabestr.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.4
Check: tests
Result: ERROR
     Running 'testthat.R' [270s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(dabestr)
     Loading required package: boot
     Loading required package: magrittr
    
     Attaching package: 'magrittr'
    
     The following objects are masked from 'package:testthat':
    
     equals, is_less_than, not
    
     >
     > test_check("dabestr")
     -- 1. Failure: Using `grp` as x column is kosher (@test-unquoting.R#50) -------
     df_analysed.result$control_size not equal to 54.
     1/1 mismatches
     [1] 40 - 54 == -14
    
     -- 2. Failure: Using `grp` as x column is kosher (@test-unquoting.R#51) -------
     df_analysed.result$test_size not equal to 46.
     1/1 mismatches
     [1] 60 - 46 == 14
    
     -- 3. Failure: Using `grp` as x column is kosher (@test-unquoting.R#53) -------
     df_analysed.result$difference not equal to -0.02769726.
     1/1 mismatches
     [1] 0.0367 - -0.0277 == 0.0644
    
     -- 4. Failure: Using `grp` as x column is kosher (@test-unquoting.R#54) -------
     round(df_analysed.result$bca_ci_low, digits = 4) not equal to -0.1253.
     1/1 mismatches
     [1] -0.0725 - -0.125 == 0.0528
    
     -- 5. Failure: Using `grp` as x column is kosher (@test-unquoting.R#55) -------
     df_analysed.result$bca_ci_high not equal to 0.07162217.
     1/1 mismatches
     [1] 0.146 - 0.0716 == 0.0742
    
     == testthat results ===========================================================
     [ OK: 17 | SKIPPED: 29 | WARNINGS: 0 | FAILED: 5 ]
     1. Failure: Using `grp` as x column is kosher (@test-unquoting.R#50)
     2. Failure: Using `grp` as x column is kosher (@test-unquoting.R#51)
     3. Failure: Using `grp` as x column is kosher (@test-unquoting.R#53)
     4. Failure: Using `grp` as x column is kosher (@test-unquoting.R#54)
     5. Failure: Using `grp` as x column is kosher (@test-unquoting.R#55)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.2.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [101s/102s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     ── 5. Failure: Using `grp` as x column is kosher (@test-unquoting.R#55) ───────
     df_analysed.result$bca_ci_high not equal to 0.07162217.
     1/1 mismatches
     [1] 0.146 - 0.0716 == 0.0742
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 17 | SKIPPED: 29 | WARNINGS: 0 | FAILED: 5 ]
     1. Failure: Using `grp` as x column is kosher (@test-unquoting.R#50)
     2. Failure: Using `grp` as x column is kosher (@test-unquoting.R#51)
     3. Failure: Using `grp` as x column is kosher (@test-unquoting.R#53)
     4. Failure: Using `grp` as x column is kosher (@test-unquoting.R#54)
     5. Failure: Using `grp` as x column is kosher (@test-unquoting.R#55)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64