CRAN Package Check Results for Package NetRep

Last updated on 2021-04-15 09:50:08 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.4 166.14 156.10 322.24 OK
r-devel-linux-x86_64-debian-gcc 1.2.4 114.41 117.40 231.81 OK
r-devel-linux-x86_64-fedora-clang 1.2.4 427.26 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.4 402.49 OK
r-devel-windows-ix86+x86_64 1.2.4 388.00 233.00 621.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.2.4 OK
r-patched-linux-x86_64 1.2.4 133.80 148.53 282.33 OK
r-patched-solaris-x86 1.2.4 283.60 ERROR
r-release-linux-x86_64 1.2.4 132.19 149.02 281.21 OK
r-release-macos-x86_64 1.2.4 NOTE
r-release-windows-ix86+x86_64 1.2.4 319.00 239.00 558.00 OK
r-oldrel-macos-x86_64 1.2.4 NOTE
r-oldrel-windows-ix86+x86_64 1.2.4 332.00 189.00 521.00 OK

Check Details

Version: 1.2.4
Check: installed package size
Result: NOTE
     installed size is 9.3Mb
     sub-directories of 1Mb or more:
     doc 1.4Mb
     libs 6.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.2.4
Check: examples
Result: ERROR
    Running examples in ‘NetRep-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: combineAnalyses
    > ### Title: Combine results of multiple permutation procedures
    > ### Aliases: combineAnalyses
    > ### Keywords: internal
    >
    > ### ** Examples
    >
    > data("NetRep")
    >
    > # Set up input lists for each input matrix type across datasets. The list
    > # elements can have any names, so long as they are consistent between the
    > # inputs.
    > network_list <- list(discovery=discovery_network, test=test_network)
    > data_list <- list(discovery=discovery_data, test=test_data)
    > correlation_list <- list(discovery=discovery_correlation, test=test_correlation)
    > labels_list <- list(discovery=module_labels)
    >
    > pres1 <- modulePreservation(
    + network=network_list, data=data_list, correlation=correlation_list,
    + moduleAssignments=labels_list, nPerm=1000, discovery="discovery",
    + test="test", nThreads=2
    + )
    [2021-04-02 19:58:20 BST] Validating user input...
    [2021-04-02 19:58:20 BST] Checking matrices for problems...
    [2021-04-02 19:58:21 BST] Input ok!
    [2021-04-02 19:58:21 BST] Calculating preservation of network subsets from
     dataset "discovery" in dataset "test".
    [2021-04-02 19:58:21 BST] Pre-computing network properties in dataset
     "discovery"...
    [2021-04-02 19:58:21 BST] Calculating observed test statistics...
    [2021-04-02 19:58:21 BST] Generating null distributions from 1000
     permutations using 2 threads...
    
    
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    [2021-04-02 19:58:25 BST] Calculating P-values...
    [2021-04-02 19:58:25 BST] Collating results...
    [2021-04-02 19:58:25 BST] Done!
    >
    > pres2 <- modulePreservation(
    + network=network_list, data=data_list, correlation=correlation_list,
    + moduleAssignments=labels_list, nPerm=1000, discovery="discovery",
    + test="test", nThreads=2
    + )
    [2021-04-02 19:58:25 BST] Validating user input...
    [2021-04-02 19:58:25 BST] Checking matrices for problems...
    [2021-04-02 19:58:25 BST] Input ok!
    [2021-04-02 19:58:26 BST] Calculating preservation of network subsets from
     dataset "discovery" in dataset "test".
    [2021-04-02 19:58:26 BST] Pre-computing network properties in dataset
     "discovery"...
    [2021-04-02 19:58:26 BST] Calculating observed test statistics...
    [2021-04-02 19:58:26 BST] Generating null distributions from 1000
     permutations using 2 threads...
    
    
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     *** caught segfault ***
    address 1e948396, cause 'memory not mapped'
    
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Flavor: r-patched-solaris-x86

Version: 1.2.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [0m/180m]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(NetRep)
     >
     > test_check("NetRep")
    
     *** caught segfault ***
     address 63ea4a8c, cause 'memory not mapped'
Flavor: r-patched-solaris-x86

Version: 1.2.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NetRep.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 286-289 (NetRep.Rmd)
    Error: processing vignette 'NetRep.Rmd' failed with diagnostics:
    dim(X) must have a positive length
    --- failed re-building ‘NetRep.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘NetRep.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86