CRAN Package Check Results for Package EHRtemporalVariability

Last updated on 2021-04-15 09:49:57 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.2.1 7.42 100.85 108.27 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.2.1 5.17 74.23 79.40 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.2.1 136.14 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.2.1 123.92 NOTE
r-devel-windows-ix86+x86_64 1.1.2.1 18.00 246.00 264.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 1.1.2.1 NOTE
r-patched-linux-x86_64 1.1.2.1 7.27 93.84 101.11 OK
r-patched-solaris-x86 1.1.2.1 181.10 WARN
r-release-linux-x86_64 1.1.2.1 6.53 95.09 101.62 OK
r-release-macos-x86_64 1.1.2.1 WARN
r-release-windows-ix86+x86_64 1.1.2.1 16.00 242.00 258.00 NOTE
r-oldrel-macos-x86_64 1.1.2.1 WARN
r-oldrel-windows-ix86+x86_64 1.1.2.1 10.00 65.00 75.00 WARN

Check Details

Version: 1.1.2.1
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-x86_64-gcc10-UCRT

Version: 1.1.2.1
Check: installed package size
Result: NOTE
     installed size is 10.0Mb
     sub-directories of 1Mb or more:
     doc 4.7Mb
     extdata 5.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "diagcode1"
    # Missing values: 0 cases ( 0%)
    # External causes codes: 0 cases ( 0%)
    # V codes not mapped: 74330 cases ( 22.82%)
    # Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
    # Unique ICD9-CM codes mapped: 3020
    # Total PheWAS codes: 757
    # ICD9 codes not mapped: 105180 cases ( 32.29%)
    Quitting from lines 322-327 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘EHRtemporalVariability.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘EHRtemporalVariability.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "diagcode1"
    # Missing values: 0 cases ( 0%)
    # External causes codes: 0 cases ( 0%)
    # V codes not mapped: 74330 cases ( 22.82%)
    # Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
    # Unique ICD9-CM codes mapped: 3020
    # Total PheWAS codes: 757
    # ICD9 codes not mapped: 105180 cases ( 32.29%)
    Warning in normalizePath(f2) :
     path[1]="webshot177e2e8cc083.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file 'webshot177e2e8cc083.png': No such file or directory
    Quitting from lines 322-327 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘EHRtemporalVariability.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘EHRtemporalVariability.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-x86_64

Version: 1.1.2.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BiocStyle’
Flavor: r-oldrel-macos-x86_64

Version: 1.1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "diagcode1"
    # Missing values: 0 cases ( 0%)
    # External causes codes: 0 cases ( 0%)
    # V codes not mapped: 74330 cases ( 22.82%)
    # Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
    # Unique ICD9-CM codes mapped: 3020
    # Total PheWAS codes: 757
    # ICD9 codes not mapped: 105180 cases ( 32.29%)
    Warning in normalizePath(f2) :
     path[1]="webshot28d93ef2aaa6.png": No such file or directory
    Warning in file(con, "rb") :
     cannot open file 'webshot28d93ef2aaa6.png': No such file or directory
    Quitting from lines 322-327 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘EHRtemporalVariability.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘EHRtemporalVariability.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 1.1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'EHRtemporalVariability.Rmd' using rmarkdown
    Bioconductor version '3.10' is out-of-date; the current release version '3.12'
     is available with R version '4.0'; see https://bioconductor.org/install
    Quitting from lines 35-36 (EHRtemporalVariability.Rmd)
    Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building 'EHRtemporalVariability.Rmd'
    
    SUMMARY: processing the following file failed:
     'EHRtemporalVariability.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64